Allow saving and loading the 3D grid to and from an HDF5 file #38
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
elenafuengar
changed the title
![github-code-quality[bot]](https://avatars.githubusercontent.com/u/9919?s=60&v=4){kind=small}
…eption'' Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
elenafuengar
added this to the
Smart non-uniform meshing around imported CAD solids milestone
Co-authored-by: Copilot Autofix powered by AI <223894421+github-code-quality[bot]@users.noreply.github.com>
…lder and/or take folder from class constructor. Ez_file is now None, and default value is result_folder+Ez.h5
…cluded domain boundaries in logger and updated test_007 to compare dict with tolerances
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
📝 Pull Request Summary
To close #32, added new functions that allow to save and load the generated grid with the imported solids STL masks to and from an HDF5 file, saving valuable time in parametric studies.
🔧 Changes Made
save_to_h5andload_from_h5routines toGridFIT3Dto enable grid saving to HDF5 and grid reconstruction from HDF5.GridFIT3Dconstructor__init__to allow 3 grid initialization methods: from domain bounds and number of cells (legacy) from x, y, z numpy arrays or from HDF5 previously saved file.GridFIT3D,SolverFIT3D,routines.py,WakeSolverWakeSolverload results, now updating folder name in self or taking self.folder if passed to constructor.Ez_fileis now set to None in constructor, and default isself.folder+'Ez.h5'.001002and006Loggerand updated test007to compare the dicts usingnp.iscloseinstead of==, working now also for MPI runs.pyproject.tomlneeded for the new functions to work✅ Checklist
docs/or included inexamples/andnotebooks/) --> added to notebook 002 and 006.📌 Related Issues / PRs
Closes #32